{"id":2555,"date":"2014-08-01T15:14:01","date_gmt":"2014-08-01T08:14:01","guid":{"rendered":"https:\/\/www.oucru.org\/?p=2555"},"modified":"2014-08-01T15:32:28","modified_gmt":"2014-08-01T08:32:28","slug":"the-genomics-of-salmonella-paratyphi-a-an-emergent-cause-of-enteric-fever-in-asia","status":"publish","type":"post","link":"https:\/\/test.oucru.org\/index.php\/2014\/08\/01\/the-genomics-of-salmonella-paratyphi-a-an-emergent-cause-of-enteric-fever-in-asia\/","title":{"rendered":"The genomics of Salmonella Paratyphi A, an emergent cause of enteric fever in Asia"},"content":{"rendered":"

Oxford University Clinical Research Unit Vietnam PhD Programme 2014-15<\/span><\/strong><\/p>\n

Project 4: <\/strong><\/p>\n

The genomics of Salmonella <\/em>Paratyphi A, an emergent cause of enteric fever in Asia<\/strong><\/p>\n

<\/strong>Required person<\/strong>: Basic laboratory scientist\/bioinformatician\/epidemiologist<\/p>\n

Type of project<\/strong>: Bacteriology\/epidemiology<\/p>\n

Potential start date: <\/strong>First quarter 2015<\/p>\n

Duration<\/strong>: Four years<\/p>\n

Techniques<\/strong>: Epidemiology, bacteriology, bioinformatics, molecular biology<\/p>\n

Location<\/strong>: Ho Chi Minh City, Vietnam<\/p>\n

Group:<\/strong> Enteric Infections<\/p>\n

Supervisor: <\/strong>Stephen Baker<\/p>\n

Current status<\/strong>: Ethical approval obtained, funded, publication<\/p>\n

Collaborations<\/strong>: Oxford University \u2013 UK, Oxford University Clinical Research Unit \u2013 Nepal<\/p>\n

<\/strong><\/p>\n

Brief outline<\/strong><\/p>\n

Salmonella<\/em> Paratyphi A is a largely understudied cause of enteric fever, and in some locations is replacing Salmonella<\/em> Typhi as the major cause of bacteremia. Currently there is no data on clinical response to therapy, phylogeny or specific immunological responses. The PhD candidate will perform a retrospective meta-analysis on >1,000 enteric fever cases and investigate the differing clinical features of the various etiological agents. Additionally the student will use bioinformatics to perform sequence analysis on a collection of Salmonella <\/em>Paratyphi A genome sequences to understand phylogeny and how specific mutations are driving the selection of this important pathogen.<\/p>\n

Potential thesis areas<\/strong><\/p>\n